Semi-automated Bash workflows for epigenomic analyses: RNA-seq, SMRT-seq, methylation motif analyses, etc. Include a step-by-step tutorial and a link to run each pipeline module via Docker.
HMM profiles for detection of Types I, II, IIC, III, and IV restriction endonucleases and methyltransferases.
List of basic commands for handling and parsing common file types (e.g. FASTA/Q, SAM, BAM, etc), word exceptionality, among others. Great for beginners!
Miscellaneous scripts for multiple purposes (e.g.: DNA walks, Shannon entropy, file encryption).
If you are interested in any of these tools, please contact Pedro H. Oliveira for more information.Contact me